| Tool | File table | Outputs |
|---|---|---|
| bamtools | wgsmetrics |
wgsmetricsmain, wgsmetricsdp, wgsmetricshisto
|
| bamtools | summary |
summarymain, summarydp
|
| bamtools | exoncvg |
exoncvgmain, exoncvgperc
|
| bamtools | genecvg |
genecvgmain, genecvgcvg
|
| cobalt | gcmed |
gcmedmain, gcmedbuckets
|
| sage | genecvg |
genecvgmain, genecvgcvg
|
Each WiGiTS tool has a single schema.yaml under inst/config/tools/<tool>/. See https://tidywf.github.io/nemo/articles/structure.html for a walkthrough of the Tool/Workflow/Config class structure and schema contents.
Fan-out
Some files split into several output tables, declared under outputs in their tool’s schema.yaml and written as <prefix>_<tool>_<output>: