Wigits Object

WiGiTS file parsing and manipulation.

Super class

nemo::Workflow -> Wigits

Methods

Public methods

• Wigits$new()

Inherited methods

• nemo::Workflow$filter_files()
• nemo::Workflow$get_metadata()
• nemo::Workflow$get_schemas_raw()
• nemo::Workflow$get_schemas_tidy()
• nemo::Workflow$get_tbls()
• nemo::Workflow$get_tools()
• nemo::Workflow$list_files()
• nemo::Workflow$print()
• nemo::Workflow$run()
• nemo::Workflow$tidy()
• nemo::Workflow$write()

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Method new()

Create a new Wigits object.

Usage

Wigits$new(path = NULL)

Arguments

path

(character(n))
Path(s) to Wigits results.

Examples

path <- system.file("extdata/oa", package = "tidywigits")
w <- Wigits$new(path)
dir1 <- tempdir()
#w$tidy()
#w$write(output_dir = dir1, format = "tsv", input_id = "input1", output_id = "out1")
x <- w$run(output_dir = file.path(dir1, "out1"), format = "parquet", input_id = "run1")
#dbconn <- DBI::dbConnect(
#  drv = RPostgres::Postgres(),
#  dbname = "nemo",
#  user = "orcabus"
#)
#x <-
#  w$run(
#    format = "db",
#    input_id = "runABC456",
#    dbconn = dbconn
#)
#DBI::dbDisconnect(dbconn)